All Classes and Interfaces

Class	Description
AccuracyEvaluator	Joins AI predictions with human-reviewed labels and scores them with AccuracyMetrics.
AccuracyEvaluator.Evaluation	Metrics together with the coverage bookkeeping of the join.
AccuracyMetrics	Pure, deterministic computation of AI-classification quality metrics from (prediction, truth) pairs.
AccuracyMetrics.Counts	Confusion counts for one binary decision.
AccuracyMetrics.Result	The complete metric set.
AccuracyMetrics.Sample	One method for which a prediction is compared with a human label.
AccuracyMetrics.TagResult	Metrics of a single taxonomy tag.
AccuracyReportRenderer	Renders an AccuracyEvaluator.Evaluation as Markdown or JSON.
AiCacheEntry	One entry of the unified AI result cache: the complete AI answer for a single test class, keyed by the class content hash and tagged with the prompt-catalogue signature that produced it.
AiCacheStore	Reads and writes the unified AI result cache as a JSON Lines file: one AiCacheEntry per line.
AiResultCache	In-memory cache of AI results loaded from a previous MethodAtlas run, keyed by the per-class content_hash fingerprint.
AiRuntime	Bundle of AI infrastructure that is constant for the duration of a scan run.
AiRuntimeBuilder	Constructs the per-run AI infrastructure: the suggestion engine, the result cache, and the human-readable taxonomy descriptor.
ApplyTagsCommand	CLI command handler for the -apply-tags mode.
ApplyTagsFromCsvCommand	CLI command handler for the -apply-tags-from-csv mode.
ApplyTagsFromCsvEngine	Engine that applies annotation changes to source files driven by a reviewed MethodAtlas CSV export.
AttestFacade	Single public entry point used by MethodAtlasApp to drive -attest.
AttestFacade.Handle	Opaque handle returned by AttestFacade.prepare(double, List).
CheckPromptsCommand	Utility CLI mode (-check-prompts) that validates prompt templates and prints their SHA-256 checksums without running a scan.
CliConfig	Parsed command-line configuration used to drive a single application run.
Command	A self-contained CLI command handler.
CommentRedaction	Applies the loaded CommentRedactors to source text on its way to an AI provider, failing closed.
ContentHasher	Pure utility helpers for content fingerprints and scan-root path prefixes.
CoverageFacade	Single public entry point used by MethodAtlasApp to drive -emit-coverage.
CoverageFacade.Handle	Opaque handle returned by CoverageFacade.prepare(Path, double).
CredentialScanUnitSource	Selects files to scan for credentials by mask and reads each into a CredentialScanUnit.
DetectCredentialsStage	Runs the deterministic detectors over the scan units, attaches best-effort enclosing-method attribution, and produces CredentialFindings.
DetectCredentialsStage.MethodRange	A method's line span, used for attribution.
DiffCommand	CLI command handler for the -diff mode.
EvalAccuracyCommand	Utility CLI mode (-eval-accuracy) that measures how accurate the AI classification is against a human-reviewed labelled set.
EvidenceFramework	Compliance frameworks that the -evidence-pack CLI mode can target.
EvidencePackCommand	Materialises a tamper-evident evidence pack on disk by running one scan and bundling every artefact an auditor needs to verify it later.
EvidencePackOptions	Immutable bag of evidence-pack options collected from the command line.
EvidenceReportFacade	Single public entry point used by MethodAtlasApp to drive -evidence-report.
EvidenceReportFacade.Handle	Opaque handle returned by EvidenceReportFacade.prepare(double, List).
GapFacade	Single public entry point used by MethodAtlasApp to drive -gap-report.
GapFacade.Handle	Opaque handle returned by GapFacade.prepare(double).
GenSigningKeyCommand	CLI command handler for the -gen-signing-key mode, which creates a ZeroEcho keyring containing a fresh signing key pair for evidence-pack signing.
GitHubAnnotationsCommand	CLI command handler for the -github-annotations output mode.
JsonCommand	CLI command handler for the -json output mode.
JsonLineFormatter	Formatter that emits one JSON object per log record, on a single line, suitable for ingestion by log-aggregation pipelines (Elastic, Splunk, Loki) and for reproducible audit-trail archives.
ManualMode	Selects between the two phases of the manual AI workflow.
ManualMode.Consume	Consume phase: read operator-saved response files and emit enriched CSV.
ManualMode.Prepare	Prepare phase: scan source files and write AI prompt work files and empty response stubs.
ManualPrepareCommand	CLI command handler for the -manual-prepare mode.
MethodAtlasApp	Command-line entry point that parses the arguments and routes the invocation to the matching Command or utility mode.
OverrideLoader	Loads classification override files into ClassificationOverride instances.
PluginLoader	Resolves and configures discovery plugins via ServiceLoader.
ReceiptFacade	Single public entry point used by MethodAtlasApp to materialise a reproducibility receipt.
RedactionAbortedException	Thrown when -redact-comments is active and comment redaction cannot be guaranteed for a source file, so the run must abort before any source is sent to an AI provider (fail-closed).
SarifCommand	CLI command handler for the -sarif output mode.
ScanCommand	CLI command handler for the default CSV and -plain output modes.
ScanOrchestrator	Orchestrates the scan-and-emit loop that every command mode is built around.
ScanRun	Immutable record identifying one CLI invocation of MethodAtlas.
ScanRunContext	Thread-local holder for the current ScanRun, the JUL-friendly equivalent of SLF4J's MDC.