ManualPrepareCommand.java

package org.egothor.methodatlas.command;

import java.io.IOException;

import java.io.PrintWriter;

import java.nio.file.Path;

import java.nio.file.Paths;

import java.util.ArrayList;

import java.util.LinkedHashMap;

import java.util.List;

import java.util.Map;

import java.util.logging.Level;

import java.util.logging.Logger;

import java.util.stream.Collectors;

import org.egothor.methodatlas.CliConfig;

import org.egothor.methodatlas.ManualMode;

import org.egothor.methodatlas.ai.AiSuggestionException;

import org.egothor.methodatlas.ai.ManualPrepareEngine;

import org.egothor.methodatlas.ai.PromptBuilder;

import org.egothor.methodatlas.api.DiscoveredMethod;

import org.egothor.methodatlas.api.TestDiscovery;

import org.egothor.methodatlas.api.TestDiscoveryConfig;

/**

 * CLI command handler for the {@code -manual-prepare} mode.

 *

 * <p>

 * Discovers test classes via the configured {@link TestDiscovery} providers,

 * then writes one work file per class to the prepare work directory.

 * No CSV output is produced; only progress lines are written to the

 * supplied {@link PrintWriter}.

 * </p>

 *

 * @see org.egothor.methodatlas.ai.ManualPrepareEngine

 * @see org.egothor.methodatlas.ai.ManualConsumeEngine

 */

public final class ManualPrepareCommand implements Command {

    private final ManualMode.Prepare prepare;

    private final CliConfig cliConfig;

    private final TestDiscoveryConfig discoveryConfig;

    private final PluginLoader pluginLoader;

    /**

     * Creates a new manual-prepare command.

     *

     * @param prepare         manual prepare mode configuration (work and response dirs)

     * @param cliConfig       full parsed CLI configuration

     * @param discoveryConfig discovery configuration forwarded to providers

     * @param pluginLoader    loader used to resolve {@link TestDiscovery}

     *                        providers from the classpath

     */

    public ManualPrepareCommand(ManualMode.Prepare prepare, CliConfig cliConfig,

    /**

     * Discovers test classes, writes work files, and reports progress.

     *

     * <p>

     * When {@code -redact-comments} is set, every class source is redacted

     * <em>before</em> any work file is written; if any class cannot be redacted

     * the command aborts with {@link RedactionAbortedException} and writes

     * nothing (fail-closed).

     * </p>

     *

     * @param out writer for progress and summary output

     * @return {@code 0} if all files were processed successfully, {@code 1} if any

     *         provider encountered a processing error

     * @throws IOException if traversing a file tree fails

     * @throws RedactionAbortedException if redaction is requested and a class

     *                                   cannot be redacted

     */

    @Override

    @SuppressWarnings("PMD.CloseResource") // providers closed by closeAll() in the finally block

    public int execute(PrintWriter out) throws IOException {

        try {

                    }

                // Group by FQCN so each class produces one work file.

                    }

                    }

        } finally {

        // Pre-flight complete: every class is redactable (or redaction is off). Only now

        // is anything written to the work directory.

        ManualPrepareEngine engine;

        try {

            try {

                }

    }

    /**

     * One class ready to be written as a work file.

     *

     * @param fileStem source file stem

     * @param fqcn     fully qualified class name

     * @param source   class source to embed in the prompt (redacted when requested)

     * @param targets  methods the AI must classify

     */

            List<PromptBuilder.TargetMethod> targets) {

    }

}

Mutations

1.1
Location : execute
Killed by : none removed conditional - replaced equality check with false → SURVIVED Covering tests

2.2
Location : execute
Killed by : none removed conditional - replaced equality check with true → TIMED_OUT

1.1
Location : execute
Killed by : none removed conditional - replaced equality check with false → SURVIVED Covering tests

2.2
Location : execute
Killed by : org.egothor.methodatlas.MethodAtlasAppRedactCommentsTest.[engine:junit-jupiter]/[class:org.egothor.methodatlas.MethodAtlasAppRedactCommentsTest]/[method:manualPrepare_withoutRedact_stillWritesWorkFile(java.nio.file.Path)] removed conditional - replaced equality check with true → KILLED

1.1
Location : execute
Killed by : none Changed increment from 1 to -1 → SURVIVED Covering tests