Package org.egothor.methodatlas.command

package org.egothor.methodatlas.command

CLI command handler implementations for MethodAtlas.

Each class in this package encapsulates one logical CLI mode and implements the Command interface. The thin routing layer in MethodAtlasApp.run(java.lang.String[], java.io.PrintWriter) selects the appropriate command based on the parsed command-line flags and delegates to it via Command.execute(java.io.PrintWriter).

Command handlers

• DiffCommand — -diff
• ScanCommand — CSV / plain-text output (default mode)
• SarifCommand — -sarif
• GitHubAnnotationsCommand — -github-annotations
• ApplyTagsCommand — -apply-tags
• ApplyTagsFromCsvCommand — -apply-tags-from-csv
• ManualPrepareCommand — -manual-prepare

Shared infrastructure

CommandSupport is a utility class that holds the static helpers shared by two or more command implementations: provider/patcher loading, scan orchestration, AI suggestion resolution, content hashing, and file-prefix computation.

Access conventions

All classes in this package are declared public so that the routing layer in MethodAtlasApp can instantiate them. They are nonetheless considered internal implementation details: callers outside this package should not depend on specific command classes; they should interact only with the Command interface and with the public methods of CommandSupport.

Related Packages

Package	Description
org.egothor.methodatlas	Provides the core command-line utility for analyzing Java test sources and producing structured metadata about JUnit test methods.
org.egothor.methodatlas.ai	AI integration layer for MethodAtlas providing automated security classification of JUnit test methods.
org.egothor.methodatlas.emit	Output emitters for MethodAtlas scan results.

Class	Description
ApplyTagsCommand	CLI command handler for the -apply-tags mode.
ApplyTagsFromCsvCommand	CLI command handler for the -apply-tags-from-csv mode.
Command	A self-contained CLI command handler.
CommandSupport	Shared static infrastructure used by two or more Command implementations.
DiffCommand	CLI command handler for the -diff mode.
GitHubAnnotationsCommand	CLI command handler for the -github-annotations output mode.
ManualPrepareCommand	CLI command handler for the -manual-prepare mode.
SarifCommand	CLI command handler for the -sarif output mode.
ScanCommand	CLI command handler for the default CSV and -plain output modes.